I have an update for this.
Today I put in the new fuel sock, new CPS, and retorqued the intake manifold and the exhaust manifold (maybe a leak in or out is causing a computer issue). I also adjusted the throttle position sensor again which was possibly off a bit. Before I was able to open the throttle maybe 5mm (didn't measure or make a note), but now I just barely turn it and it clicks almost the instant I turn it.
I have not run the car after doing this (didn't want to let the cold into my warm garage) but I will look into it tomorrow. At this point I'm not sure what else to really look at.